daily tag quicklook update
wrc
2023-09-03
1 setup
Run this daily to get a snapshot of tag stats and health
2 notes
2.1 PATH TO LATEST DATA
# paths to update when you run
portaldir <- "portal_downloads"
datadirss <- list.files(portaldir)
datadir <- file.path(portaldir, datadirss[length(datadirss)])2.2 basic helper function
2.3 load paths adjust as needed
2.4 Import data from wildlife portal and the goniometer. Merge the two stacks.
3 tag summary
| ptt | hex | serial | tag_model | deployid | catalog_ID_DUML | BRS_season | deploydate_yyyymmdd | deploytime_hhmm | species | location | tagger | permit | tagtype | longitude | latitude | tagside | taglocation | taglocationnotes | programming_basic_descriptor | notes | recorder | age | sex | agesex_conf | headshot | agesex_reason | appearance_notes | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4 | 220740 | 2C2704C | NA | SPLASH10-333 | ZcTag136_DUML | NA | brs10 | 20230725 | 1321 | Zca | Hat | dlw | NA | NA | NA | NA | L | NA | NA | NA | NA | NA | a | m | high | y | teeth | NA |
| 5 | 220736 | 2C27000 | NA | SPLASH10-333 | ZcTag137_DUML | NA | brs10 | 20230725 | 1449 | Zca | Hat | dlw | NA | NA | NA | NA | L | NA | NA | NA | NA | NA | a | f | high | y | mother calf | NA |
| 6 | 220743 | 2C27079 | NA | SPLASH10-333 | ZcTag138_DUML | NA | brs10 | 20230725 | 1924 | Zca | Hat | dlw | NA | NA | NA | NA | R | NA | NA | NA | NA | NA | a | m | high | y | teeth | NA |
| 1 | 220745 | 2C27098 | NA | SPLASH10-333 | ZcTag139_DUML | NA | brs10 | 20230726 | 1638 | Zca | Hat | dlw | NA | NA | NA | NA | R | NA | NA | NA | NA | NA | u | u | y | NA | ||
| 2 | 233112 | 406B18B | NA | SPLASH10-333 | ZcTag140_DUML | NA | brs10 | 20230726 | 1958 | Zca | Hat | dlw | NA | NA | NA | NA | R | NA | NA | NA | NA | NA | a | m | high | y | teeth | NA |
| 3 | 233115 | 406B1BE | NA | SPLASH10-333 | ZcTag141_DUML | NA | brs10 | 20230726 | 2027 | Zca | Hat | dlw | NA | NA | NA | NA | L | NA | NA | NA | NA | NA | a | m | high | y | teeth | NA |
| 9 | 233118 | 406B1E1 | NA | SPLASH10-333 | ZcTag142_DUML | NA | brs10 | 20230807 | 1340 | Zca | Hat | dlw | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | ||||||
| 8 | 233110 | 406B16A | NA | SPLASH10-F-333 | ZcTag143_DUML | NA | brs10 | 20230807 | 1558 | Zca | Hat | dlw | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | ||||||
| 7 | 233111 | 406B179 | NA | SPLASH10-F-333 | ZcTag144_DUML | NA | brs10 | 20230807 | 1620 | Zca | Hat | dlw | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | ||||||
| 10 | 233108 | 406B14C | NA | SPLASH10-F-333 | ZcTag145_DUML | NA | brs10 | 20230821 | 1901 | Zca | Hat | dlw | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | ||||||
| 11 | 233107 | 406B135 | NA | SPLASH10-F-333 | ZcTag146_DUML | NA | brs10 | 20230821 | 1914 | Zca | Hat | dlw | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
4 calculate stats
## Warning in min(x): no non-missing arguments to min; returning Inf## Warning in max(x): no non-missing arguments to max; returning -Inf5 summaries
5.1 status and corrupt
| deployid | ptt | nmsg | ncrc | transmits | battvoltrange | zerodepthrange | last_sta_recieved | ncorrupt | |
|---|---|---|---|---|---|---|---|---|---|
| 2 | ZcTag136_DUML | 220740 | 96 | 95 | 14344 | 3.248 to 3.568 | -13 to 5 | 2023-09-03 02:38:32 | 265 |
| 1 | ZcTag137_DUML | 220736 | 29 | 26 | 9451 | 3.376 to 3.504 | 1 to 3 | 2023-09-02 01:02:22 | 314 |
| 3 | ZcTag138_DUML | 220743 | 10 | 6 | 871 | 3.568 to 3.568 | 2 to 3 | 2023-08-07 14:30:41 | 334 |
| 4 | ZcTag139_DUML | 220745 | 12 | 12 | 7471 | 3.504 to 3.568 | -37 to 1 | 2023-08-22 15:18:42 | 158 |
| 9 | ZcTag140_DUML | 233112 | 7 | 7 | 1188 | 3.44 to 3.504 | 1 to 3 | 2023-08-02 11:16:31 | 81 |
| 10 | ZcTag141_DUML | 233115 | 16 | 15 | 1702 | 3.504 to 3.504 | 1 to 3 | 2023-07-30 14:31:55 | 52 |
| 11 | ZcTag142_DUML | 233118 | 40 | 38 | 7938 | 3.44 to 3.504 | 3 to 6 | 2023-09-02 00:38:38 | 144 |
| 7 | ZcTag143_DUML | 233110 | 9 | 9 | 8272 | 3.44 to 3.504 | -6 to 3 | 2023-09-03 01:05:24 | 268 |
| 8 | ZcTag144_DUML | 233111 | 2 | 1 | NA | Inf to -Inf | 3 to 3 | 2023-08-30 08:51:59 | 378 |
| 6 | ZcTag145_DUML | 233108 | 1 | 0 | 0 | 116 | |||
| 5 | ZcTag146_DUML | 233107 | 15 | 14 | 3831 | 3.504 to 3.504 | 1 to 3 | 2023-09-03 01:06:39 | 99 |
5.2 locations
| deployid | ptt | nloc | nz | na | nb | n0 | n1 | n2 | n3 | last_loc_recieved | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 2 | ZcTag136_DUML | 220740 | 662 | 1 | 44 | 152 | 287 | 133 | 36 | 9 | 2023-09-03 09:34:19 |
| 1 | ZcTag137_DUML | 220736 | 513 | 1 | 79 | 182 | 162 | 67 | 19 | 3 | 2023-09-03 11:08:06 |
| 3 | ZcTag138_DUML | 220743 | 213 | 0 | 37 | 114 | 29 | 24 | 6 | 3 | 2023-08-12 16:06:58 |
| 4 | ZcTag139_DUML | 220745 | 206 | 1 | 24 | 143 | 28 | 6 | 2 | 2 | 2023-08-23 03:13:58 |
| 9 | ZcTag140_DUML | 233112 | 71 | 1 | 13 | 31 | 19 | 4 | 3 | 0 | 2023-08-02 11:15:31 |
| 10 | ZcTag141_DUML | 233115 | 63 | 1 | 10 | 20 | 24 | 7 | 1 | 0 | 2023-07-30 17:41:17 |
| 11 | ZcTag142_DUML | 233118 | 367 | 0 | 51 | 74 | 166 | 57 | 17 | 2 | 2023-09-03 09:59:18 |
| 7 | ZcTag143_DUML | 233110 | 309 | 1 | 47 | 126 | 105 | 23 | 7 | 0 | 2023-09-03 09:35:05 |
| 8 | ZcTag144_DUML | 233111 | 278 | 0 | 48 | 161 | 55 | 11 | 2 | 1 | 2023-09-03 10:05:15 |
| 6 | ZcTag145_DUML | 233108 | 67 | 0 | 8 | 35 | 20 | 2 | 2 | 0 | 2023-08-27 00:54:50 |
| 5 | ZcTag146_DUML | 233107 | 182 | 0 | 23 | 58 | 79 | 19 | 1 | 2 | 2023-09-03 09:37:16 |
5.3 behavior
| deployid | ptt | n_beh_msgs | totalbeh_time_hours | nbehgaps | behgap_time_hours | latest_beh_recieved | |
|---|---|---|---|---|---|---|---|
| 2 | ZcTag136_DUML | 220740 | 0 | 0 | 0 | 0 | |
| 1 | ZcTag137_DUML | 220736 | 0 | 0 | 0 | 0 | |
| 3 | ZcTag138_DUML | 220743 | 0 | 0 | 0 | 0 | |
| 4 | ZcTag139_DUML | 220745 | 0 | 0 | 0 | 0 | |
| 9 | ZcTag140_DUML | 233112 | 0 | 0 | 0 | 0 | |
| 10 | ZcTag141_DUML | 233115 | 0 | 0 | 0 | 0 | |
| 11 | ZcTag142_DUML | 233118 | 0 | 0 | 0 | 0 | |
| 7 | ZcTag143_DUML | 233110 | 0 | 0 | 0 | 0 | |
| 8 | ZcTag144_DUML | 233111 | 0 | 0 | 0 | 0 | |
| 6 | ZcTag145_DUML | 233108 | 0 | 0 | 0 | 0 | |
| 5 | ZcTag146_DUML | 233107 | 0 | 0 | 0 | 0 |
5.4 series
this doesn’t count the messages quite right for some reason, but you get the idea. you can scroll down below and see the plot of messages receieved.
| deployid | ptt | n_ser_msgs | totalser_time_hours | nsergaps | sergap_time_hours | nsermsggaps | latest_ser_recieved | |
|---|---|---|---|---|---|---|---|---|
| 2 | ZcTag136_DUML | 220740 | 129 | 516 | 0 | 0 | 0 | 2023-08-16 |
| 1 | ZcTag137_DUML | 220736 | 128 | 512 | 1 | 4 | 1 | 2023-08-16 |
| 3 | ZcTag138_DUML | 220743 | 37 | 148 | 18 | 120 | 30 | 2023-08-05 20:00:00 |
| 4 | ZcTag139_DUML | 220745 | 49 | 192 | 19 | 328 | 82 | 2023-08-17 |
| 9 | ZcTag140_DUML | 233112 | 19 | 76 | 6 | 40 | 10 | 2023-07-31 16:00:00 |
| 10 | ZcTag141_DUML | 233115 | 16 | 64 | 3 | 28 | 7 | 2023-07-30 16:00:00 |
| 11 | ZcTag142_DUML | 233118 | 122 | 488 | 5 | 24 | 6 | 2023-08-28 20:00:00 |
| 7 | ZcTag143_DUML | 233110 | 60 | 240 | 11 | 76 | 19 | 2023-08-20 20:00:00 |
| 8 | ZcTag144_DUML | 233111 | 29 | 116 | 14 | 184 | 46 | 2023-08-20 08:00:00 |
| 6 | ZcTag145_DUML | 233108 | 4 | 16 | 1 | 8 | 2 | 2023-08-22 16:00:00 |
| 5 | ZcTag146_DUML | 233107 | 49 | 196 | 5 | 52 | 13 | 2023-09-01 |
5.5 fastloc
| deployid | ptt | fastloc_received | fastloc_locnum | fastloc_failures | fastloc_latest |
|---|---|---|---|---|---|
| ZcTag137_DUML | 220736 | 0 | 0 | 0 | 0 |
| ZcTag136_DUML | 220740 | 0 | 0 | 0 | 0 |
| ZcTag138_DUML | 220743 | 0 | 0 | 0 | 0 |
| ZcTag139_DUML | 220745 | 0 | 0 | 0 | 0 |
| ZcTag146_DUML | 233107 | 31 | 39 | 97 | 02-Sep-2023 09:01:00 |
| ZcTag145_DUML | 233108 | 3 | 2 | 13 | 22-Aug-2023 16:42:02 |
| ZcTag143_DUML | 233110 | 61 | 338 | 414 | 26-Aug-2023 21:33:15 |
| ZcTag144_DUML | 233111 | 34 | 52 | 193 | 25-Aug-2023 22:02:20 |
| ZcTag140_DUML | 233112 | 0 | 0 | 0 | 0 |
| ZcTag141_DUML | 233115 | 0 | 0 | 0 | 0 |
| ZcTag142_DUML | 233118 | 0 | 0 | 0 | 0 |
6 position snapshot
Plot of the last four positions for all the tags which have generated an argos position within the last 3 days
7 plot pressure sensors
PROVISIONAL plot status cutoffs and bat voltage. Cutoffs are in dotted red lines. These are either:
- healthy tags: the last status messages as a conservative cutoff and on tags that are still actively transmitting this is likely to increase
- unhealthy pressure transducer tags: if there are 2 status messages (crc’d) where the | zerodepth | > 10 then this is the last good status message before the 1st of those two bad messages.
We have settled on a more complicated cutoff system to capture a little more very likely good data. For detail please see DATAPREP_sattag_processing. But this gives you a general idea of approx. cutoffs and pressure transducer health.
8 control cee
8.1 +/- 12 hour look at ship based cee 23_01 on 20220804
gonio hits in purple
9 series message source plots
10 corrupt by cohort
11 zoom in on megadives from 136 while offshore
note the time frames highlighted on the map are approximately the same just had a different number of uplinks and precision at those times.
